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SAK-32127 If making the Resources tool invisible, hide root (#3811)

* SAKAI-32127 If making the Resources tool invisible, hide root

Hiding the page the resources tool is on now sets the root collection

to hidden but users still able to access.

This behavior is allowed by setting the sakai.property

poh.resources.hidden.special.hidden

to true. The default for this property is false.

* SAK-32127 elfinder now drops users into root of site

elfinder now drops users into the root of a site, instead of into

the resources folder of the site. Changes to builder.js where made

to be compatible with npm 4.0.5.

* SAK-32127 Add Atachments respects Special Hidden

Add Attachments, from Assignments / Forums, now respects when the

siteCollection (aka the root resources folder of a site) is special

hidden (hidden, but contents accessible). This is done by logging the

PermissionException which occurs and continuing.

* SAK-32127 Minor improvements

Minor improvements as a result of code review.

When importing comment items, compare against existing data to determine the correct status (#3907)

* Remove unused code and cleanup other compiler warnings

* #3868 check imported comment items against the existing data and only mark as update if they need to be updated

Add icon to instructor grade summary for external items (#3903)

* Remove unused code and cleanup other compiler warnings

* #3040 Add external app icon to the instructor grade summary window

SAK-32185 Circular dependencies check later in build (#3913)

If you attempt todo `mvn validate` againast an empty repository it will fail because inter project dependencies aren't yet installed in the local repository and so can't be found. Moving the circular dependencies check to later in the builds means we can keep doing it but not break the validate phase.

(cherry picked from commit 85f6e050f3e7179693cdf58cfd33b9142b76ce9c)

SAK-32185 Circular dependencies check later in build (#3913)

If you attempt todo `mvn validate` againast an empty repository it will fail because inter project dependencies aren't yet installed in the local repository and so can't be found. Moving the circular dependencies check to later in the builds means we can keep doing it but not break the validate phase.

KNL-1471 - Upgrade tika to 1.14 (#3892)

KNL-1471 - Upgrade tika to 1.14 (#3892)

SAM-2914 - Autosubmit job doesn't with with user in a group (#3902)

SAK-32183 Update hibernate mapping DTD. (#3910)

This were emitting WARNINGs in the logs on startup because the references were to the old DTD on sourceforge.

SAK-32182 Remove redundant ToolListeners (#3909)

Having a tools listener (to register Sakai tools) without any tool registration results in needless warnings in the logs.

LSNBLDR-780 Don’t fail to parse bad mneme references. (#3880)

In the database we have mneme references of /dummy which are causing the page to blow up. We should stop the /dummy references from appearing but it should also not be the case that these cause the page to blow up.

Update namespaces (#3906)

* Remove unused code and cleanup other compiler warnings

* #3843 update namespaces

  1. … 23 more files in changeset.
Add missing label on permissions screen (#3905)

* Remove unused code and cleanup other compiler warnings

* #3874 Resynced wicket versions and added the missing property

(cherry picked from commit a3d9d2f66ccc224352ba8d840d63f65e3b907508)

Add missing label on permissions screen (#3905)

* Remove unused code and cleanup other compiler warnings

* #3874 Resynced wicket versions and added the missing property

Merge branch 'master' of https://github.com/sakaiproject/sakai

Reduce length of text (#3904)

* Remove unused code and cleanup other compiler warnings

* #3876 make text shorter and panel wider to fit on two lines

(cherry picked from commit a90f1666461fef8a54d9d2acec740fd587ecbb6f)

Reduce length of text (#3904)

* Remove unused code and cleanup other compiler warnings

* #3876 make text shorter and panel wider to fit on two lines

SAK-32163 Add commons-collection4 to tomcat/lib (#3893)

The upgrade of ical4j to version 2 depends on commons-collection4 so we also need that in the shared classloader. It can co-exist with older commons-collections as all it’s classes are in a different package.

3800 more changes. Change order of matching to ignore earlier and look for course grade (#3896)

3800 more changes. Change order of matching to ignore earlier and look for course grade (#3896)

Custom role without gb permissions now handled better (#3838)

* Remove unused code and cleanup other compiler warnings

* #3804 Add a checked exception when fetching the user role and there is an error.

Wrap this up in BasePage and GbPanel. GbPanel is now a useful Panel to extend to save dependency injection everywhere.

More panels should inherit this

* #3804 Refactor all panels to use the same base panel. Also renamed GbPanel to BasePanel.

* #3804 javadoc fix for BasePanel

  1. … 28 more files in changeset.
3842 Force gradebookng to use sakai's preferred version of jQuery and Bootstrap (#3895)

This ensure that:

1) one version jQuery is loaded into any GradebookNG page

2) the bootstrap widgets are paired with the version of jQuery that Wicket also relies on

3) bootstrap is no longer loaded twice on GradebookNG pages (widgets were sometimes initialized twice)

3842 Force gradebookng to use sakai's preferred version of jQuery and Bootstrap (#3895)

This ensure that:

1) one version jQuery is loaded into any GradebookNG page

2) the bootstrap widgets are paired with the version of jQuery that Wicket also relies on

3) bootstrap is no longer loaded twice on GradebookNG pages (widgets were sometimes initialized twice)

LSNBLDR-725; handle the "all groups" option (#3901)

LSNBLDR-725; handle the "all groups" option (#3901)

LSNBLDR-725; avoid error if group no longer exists (#3900)

LSNBLDR-725; avoid error if group no longer exists (#3900)

SAK-32132 : Content-review : Urkund Implementation (#3830)

Upgrade for Assignments tool and Base content-review

SAK-27980 Fix for merge back to 11.

This is because on trunk the covers have been removed, but they are still there on the stable branch.

SAM-3140 Regression: Question Pool Properties missing in Edit Question (#3890)

Pool screen